Werner was reportedly close to joining Bayern before the season, but the Bavarians did not make a formal bid.
Salihamidzic has now helped to shed light on that decision, suggesting that the striker is not a good fit for their system and that pairing him with star forward Robert Lewandowski would be a tall order.
"Timo Werner is a good player who played an excellent first half of the season," Salihamidzic told
Bild.
"However, we have Robert Lewandowski. Robert is a striker who fits our style of play perfectly.
"Robert has the ability to orientate himself in a tight space, the technical ability to move in tight spaces and to find extraordinary solutions with the ball.
"With his speed, Timo Werner needs more room, which he had in the system that Leipzig played. The system at RB has now changed, but it is still not as tight at the front as it is with us."