I've seen this idea that Assad held 'democratic' elections being thrown about lately - that Eva Bartlett one even based her claim that the majority of Syrians support Assad (not an unreasonable claim btw) on the 'fact' that he got 88% in the last election - despite the sense she spoke with regards to the mainstream media's stance, that marks her out as a regime stooge.
No Ba'th party anytime, anywhere, has or ever will hold free and fair elections. The Ba'th is incapable of reform. It can't be part of any democratic future, and the idea that it is 'secular' is also quite problematic if we're defining that term along Western norms.
Having said that, democracy and elections are the last thing most of the Middle East needs right now. Most Middle Easterners at the moment are tied to their tribe, sect, or ethnic group, ideas of nationalism tend to become tied to these and there is a lack of a strong attachment to any broader civil identity. That is not to say that things won't and can't change, it's just the reality at this moment in time. The situation in North Africa is a bit different since Egypt and Tunisia (and Morocco I'd argue) have a greater sense of national identity.
So when elections are held, they produce results along those fault lines in society, which only serve to entrench the differences between people, which in turns makes minorities nervous and majorities emboldened (this is one reason why minority rule has been so common in the history of the Middle East). Which is a recipe for further conflict and external meddling. There needs to be a fundamental change in society before any elections are held.
Syria will probably be partitioned, but it won't be a neat and tidy process (how can it be as the result of a bloody civil war?) and it won't necessarily reflect ethnic or sectarian lines beyond the Kurdish areas (and I don't think that's necessarily desirable), it'll reflect Turkish-Iranian-Russian-American power politics. In any case dividing along sectarian lines in Syria would be very tough, Alawites live all over the country - yes they have been traditionally concentrated in the coastal hinterland, but the coast itself is largely Sunni, so you'd have a small, mountainous Alawite island surrounded by a Sunni state. And you'd have to deal with all those Sunnis who'd prefer to live under Assad. Christian's are dispersed all over the country, and the Druze are concentrated South-East of Damascus and on the Golan, far away from any potential Alawite rump state.
And Assad now controls all the major Sunni population centers, why would he give them up willingly?